pygot.datasets.synthetic

pygot.datasets.synthetic(file_path: Path | str | None = 'data/Synthetic/tutorial_synthetic_data.h5ad')

Sythetic data

Data generated using simulator from Pratapa et al. (2020).

This data is generated from a gene regulatory network of 18 genes, which drives cells differentiate linearly. The groundtruth stored in adata.uns[‘ref_network’] and the groundtruth velocity store in adata.layers[‘velocity_groundtruth’] The underlying GRN is

Return type:

Returns adata object