Index _ | C | D | E | F | G | I | L | M | P | R | S | T | V _ __init__() (pygot.preprocessing.GS_VAE method) (pygot.tools.analysis.CellFate method) (pygot.tools.analysis.GRN method) (pygot.tools.analysis.GRNData method) (pygot.tools.analysis.ProbabilityModel method) (pygot.tools.analysis.TimeSeriesRoadmap method) C CellFate (class in pygot.tools.analysis) compute_state_coupling() (pygot.tools.analysis.TimeSeriesRoadmap method) D determine_source_state() (in module pygot.tools.traj) E estimate_pseudotime() (pygot.tools.analysis.ProbabilityModel method) estimate_variance() (pygot.tools.analysis.ProbabilityModel method) export_grn_into_celloracle() (pygot.tools.analysis.GRNData method) export_result() (pygot.tools.analysis.TimeSeriesRoadmap method) F filter_state_coupling() (pygot.tools.analysis.TimeSeriesRoadmap method) fit() (pygot.preprocessing.GS_VAE method) (pygot.tools.analysis.CellFate method) (pygot.tools.analysis.GRN method) (pygot.tools.analysis.ProbabilityModel method) fit_transform() (pygot.preprocessing.GS_VAE method) fit_velocity_model() (in module pygot.tools.traj) fit_velocity_model_without_time() (in module pygot.tools.traj) G get_cluster_transition_map() (pygot.tools.analysis.CellFate method) GRN (class in pygot.tools.analysis) GRNData (class in pygot.tools.analysis) GS_VAE (class in pygot.preprocessing) I inverse_transform() (pygot.preprocessing.GS_VAE method) L latent2gene_velocity() (in module pygot.tools.traj) latent_velocity() (in module pygot.tools.traj) M module pygot P plot_root_cell() (in module pygot.plotting) plot_trajectory() (in module pygot.plotting) precompute_gs() (pygot.preprocessing.GS_VAE method) pred_gs_using_x() (pygot.preprocessing.GS_VAE method) pred_gs_using_z() (pygot.preprocessing.GS_VAE method) ProbabilityModel (class in pygot.tools.analysis) process_gs() (pygot.preprocessing.GS_VAE method) pygot module R register_model() (pygot.preprocessing.GS_VAE method) S simulate_trajectory() (in module pygot.tools.traj) synthetic() (in module pygot.datasets) T TimeSeriesRoadmap (class in pygot.tools.analysis) to() (pygot.tools.analysis.ProbabilityModel method) transform() (pygot.preprocessing.GS_VAE method) V velocity() (in module pygot.tools.traj)